Build:
- 0
2026-09-03 22:33.21: New job: build lbvs_consent.2.1.3 (7a066c97327e)
2026-09-03 22:33.21: Waiting for resource in pool day11-builds
2026-09-03 23:12.28: Got resource from pool day11-builds
2026-09-03 23:12.28: [profile full] build lbvs_consent.2.1.3
2026-09-03 23:12.28: build lbvs_consent.2.1.3 (7a066c97327e)
=== DEPENDENCIES (40 transitive) ===
base-bigarray.base 31ac6860ef52
base-bytes.base a07bc30a9819
base-threads.base 3d2f2cbc6db2
base-unix.base 3a38ddca6b5e
batteries.3.11.0 8e626b5df633
bitv.2.1 516e45116b83
camlp-streams.5.0.1 7241cfbb9546
camlzip.1.14 55fbe9282a52
compiler-cloning.enabled 966a2e6839f0
conf-boost.1 9ab2aded4b50
conf-openbabel.0.1 4dbbf766914e
conf-pkg-config.5 74f50f3cfe72
conf-python-3.9.0.0 c8ed77e42b03
conf-rdkit.1 8986862dc4b5
conf-zlib.1 26591fa9352c
cpm.12.2.0 d47ecb050234
csexp.1.5.2 58b250503765
dokeysto.4.0.2 83a5134f2a95
dolog.6.0.0 5188b127169e
dune.3.24.2 ec704e062ad3
dune-configurator.3.24.2 183455f65a68
extunix.0.4.4 680f33e9a057
minicli.5.0.2 d458db722a0c
num.1.6 805d35561ae4
ocaml.5.5.0 22ebd7932512
ocaml-base-compiler.5.5.0 db1659234e8a
ocaml-compiler.5.5.0 7f52fb26d939
ocaml-compiler-libs.v0.17.0 5bb965f7a9b8
ocamlfind.1.9.9~preview 6a4c70487cf9
ounit2.2.2.7 9f1b03bcbeef
parmap.1.2.5 e827d1ffc954
ppx_derivers.1.2.1 b98ec33f5664
ppxlib.0.38.0 3ee699583a7b
qcheck.0.91 cd343bb3f3f4
qcheck-core.0.91 7f9688ad8241
qcheck-ounit.0.91 31642533d016
seq.base 28d30f6112ac
sexplib0.v0.17.0 ff60a3c976cf
stdlib-shims.0.3.0 8ab1e1c44699
vpt.5.0.0 abccc3fd0eb4
=== STDOUT ===
Processing: [default: loading data]
[lbvs_consent.2.1.3: dl]
[lbvs_consent.2.1.3: extract]
[lbvs_consent.2.1.3/makefile.patch: dl]
-> retrieved lbvs_consent.2.1.3 (https://opam.ocaml.org/cache)
[lbvs_consent: patch] applying makefile.patch
[lbvs_consent: make obmaccs]
+ /usr/bin/make "obmaccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.3)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.3/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/14/bits/stl_tree.h:65,
- from /usr/include/c++/14/map:62,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.3/src'
[lbvs_consent: dune build]
+ /home/opam/.opam/default/bin/dune "build" "-p" "lbvs_consent" "-j" "39" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.3)
-> compiled lbvs_consent.2.1.3
[lbvs_consent: cp]
+ /usr/bin/cp "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/default/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.3)
[lbvs_consent: cp]
+ /usr/bin/cp "src/lbvs_consent_ob_maccs" "/home/opam/.opam/default/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.3)
-> installed lbvs_consent.2.1.3
[WARNING] Opam packages conf-boost.1, conf-openbabel.0.1, conf-python-3.9.0.0, conf-rdkit.1 and conf-zlib.1 depend on the following system packages that are no longer installed: libboost-dev libopenbabel-dev librdkit-dev python3 python3-rdkit zlib1g-dev
- conf-boost.1: depends on libboost-dev
- conf-openbabel.0.1: depends on libopenbabel-dev
- conf-python-3.9.0.0: depends on python3
- conf-rdkit.1: depends on librdkit-dev, python3-rdkit
- conf-zlib.1: depends on zlib1g-dev
=== STDERR ===
2026-09-03 23:12.55: OK: build lbvs_consent.2.1.3 (runc: 11.1s, disk: 14KB)
2026-09-03 23:12.55: Job succeeded