Build:
- 0
2026-09-03 23:35.51: New job: build lbvs_consent.2.1.2 (32bda1fb804e)
2026-09-03 23:35.51: Waiting for resource in pool day11-builds
2026-09-04 00:33.07: Got resource from pool day11-builds
2026-09-04 00:33.07: [profile full] build lbvs_consent.2.1.2
2026-09-04 00:33.07: build lbvs_consent.2.1.2 (32bda1fb804e)
=== DEPENDENCIES (49 transitive) ===
base-bigarray.base 31ac6860ef52
base-bytes.base 68d84c459288
base-threads.base 3d2f2cbc6db2
base-unix.base 3a38ddca6b5e
batteries.3.11.0 406960c0fc70
bitv.2.1 edb92b44778e
camlp-streams.5.0.1 4c58a1da28ba
camltc.0.9.8 6c22b39fcfb4
camlzip.1.14 a581e4e5e5ff
conf-bash.1 6de2a9c16097
conf-boost.1 9ab2aded4b50
conf-openbabel.0.1 4dbbf766914e
conf-pkg-config.5 74f50f3cfe72
conf-python-3.9.0.0 c8ed77e42b03
conf-rdkit.1 8986862dc4b5
conf-zlib.1 26591fa9352c
cpm.12.2.0 b248c5613869
cppo.1.8.0 8b34f9718c9c
csexp.1.5.2 c758d7657e5b
dokeysto.4.0.2 2d7db45f56a3
dokeysto_camltc.4.0.2 ce7248cfe4b6
dolog.6.0.0 c32b402b6751
dune.3.24.2 bf83cdf0a904
dune-configurator.3.24.2 23afe5cb4d3b
extunix.0.4.4 54235c84392b
logs.0.10.0 f363508872ea
lwt.6.1.2 3072189ea5c2
minicli.5.0.2 58996089623a
minivpt.2.0.0 f1111d690beb
num.1.6 fe036226102b
obuild.0.3.0 7f6cffeb1aea
ocaml.4.14.4 c7d6265b51fe
ocaml-base-compiler.4.14.4 7a409b6ffbef
ocaml-compiler-libs.v0.12.4 0a923ba812db
ocaml-config.2 85edea6ac168
ocamlbuild.0.16.1 5ae5ab4d19bf
ocamlfind.1.9.8 3cae95bed0a0
ocplib-endian.1.2 a626410be6a1
ounit2.2.2.7 160ca7dcdaf6
parmap.1.2.5 d4af2b07690d
ppx_derivers.1.2.1 e8685a77fc9e
ppxlib.0.38.0 4fd127ac1dbb
qcheck.0.91 67fffadf37a2
qcheck-core.0.91 4a8c9f770061
qcheck-ounit.0.91 65a1cbcf043c
seq.base 1957e27deb9b
sexplib0.v0.17.0 17292fd79d80
stdlib-shims.0.3.0 484c72a128b6
topkg.1.1.1 f1122af0988e
=== STDOUT ===
Processing: [default: loading data]
[lbvs_consent.2.1.2: dl]
[lbvs_consent.2.1.2: extract]
[lbvs_consent.2.1.2/makefile.patch: dl]
-> retrieved lbvs_consent.2.1.2 (https://opam.ocaml.org/cache)
[lbvs_consent: patch] applying makefile.patch
[lbvs_consent: make obmaccs]
+ /usr/bin/make "obmaccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.2)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.2/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/14/bits/stl_tree.h:65,
- from /usr/include/c++/14/map:62,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.2/src'
[lbvs_consent: dune build]
+ /home/opam/.opam/default/bin/dune "build" "-p" "lbvs_consent" "-j" "39" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.2)
-> compiled lbvs_consent.2.1.2
[lbvs_consent: cp]
+ /usr/bin/cp "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/default/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.2)
[lbvs_consent: cp]
+ /usr/bin/cp "src/lbvs_consent_ob_maccs" "/home/opam/.opam/default/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.1.2)
-> installed lbvs_consent.2.1.2
[WARNING] Opam packages conf-boost.1, conf-openbabel.0.1, conf-python-3.9.0.0, conf-rdkit.1 and conf-zlib.1 depend on the following system packages that are no longer installed: libboost-dev libopenbabel-dev librdkit-dev python3 python3-rdkit zlib1g-dev
- conf-boost.1: depends on libboost-dev
- conf-openbabel.0.1: depends on libopenbabel-dev
- conf-python-3.9.0.0: depends on python3
- conf-rdkit.1: depends on librdkit-dev, python3-rdkit
- conf-zlib.1: depends on zlib1g-dev
=== STDERR ===
2026-09-04 00:33.28: OK: build lbvs_consent.2.1.2 (runc: 7.4s, disk: 15KB)
2026-09-04 00:33.28: Job succeeded