Build:
- 0
2026-09-04 03:58.56: New job: build biotk.0.3 (42428f099bb7) 2026-09-04 03:58.56: Waiting for resource in pool day11-builds 2026-09-04 04:11.43: Got resource from pool day11-builds 2026-09-04 04:11.43: [profile full] build biotk.0.3 2026-09-04 04:11.43: build biotk.0.3 (42428f099bb7) === DEPENDENCIES (112 transitive) === angstrom.0.16.1 a323ffd89c88 angstrom-unix.0.16.1 ebe25d1037fd base.v0.17.3 82edd6e178f2 base-bigarray.base 31ac6860ef52 base-threads.base 3d2f2cbc6db2 base-unix.base 3a38ddca6b5e base_bigstring.v0.17.0 47746e97a931 base_quickcheck.v0.17.1 8292b3cd2c15 bigstringaf.0.10.0 93e506531296 bin_prot.v0.17.0-1 f457928811c3 binning.0.0.0 d1b6458c5c7a camlzip.1.14 55fbe9282a52 capitalization.v0.17.0 82443cbc4921 cmdliner.2.1.1 ecdcaec2c5a2 compiler-cloning.enabled 966a2e6839f0 conf-gsl.2 dfe9451d2b78 conf-pkg-config.5 74f50f3cfe72 conf-zlib.1 26591fa9352c core.v0.17.2 4d0c6c270b92 core_kernel.v0.17.0 43b5647ea3e7 core_unix.v0.17.1 daca20186819 cppo.1.8.0 83351009e21e crunch.4.1.0 0377a001c5ec csexp.1.5.2 58b250503765 csvfields.v0.17.0 6322b64cbd91 dune.3.24.2 ec704e062ad3 dune-configurator.3.24.2 183455f65a68 expect_test_helpers_core.v0.17.0 a072c9ce082f fieldslib.v0.17.0 ff8d0a0e6827 fmt.0.11.0 b2f0e848af4b gel.v0.17.0 539353761af5 gg.1.0.0 66384dde1395 gsl.1.25.1 58c190e78dc1 int_repr.v0.17.0 eba43dc0cebb jane-street-headers.v0.17.0 31f6aaaf1e09 jst-config.v0.17.0 9557db850975 num.1.6 805d35561ae4 ocaml.5.5.0 22ebd7932512 ocaml-base-compiler.5.5.0 db1659234e8a ocaml-compiler.5.5.0 7f52fb26d939 ocaml-compiler-libs.v0.17.0 5bb965f7a9b8 ocaml-syntax-shims.1.0.0 c27f011a36e9 ocaml_intrinsics_kernel.v0.17.2 73ed8f7cbaaf ocamlbuild.0.16.1 ccce18256717 ocamlfind.1.9.9~preview 6a4c70487cf9 otfm.0.4.0 50808c4c70e3 parsexp.v0.17.0 bd04d8f8cb39 ppx_assert.v0.17.0 00c1faf15503 ppx_base.v0.17.0 b43b2edb8713 ppx_bench.v0.17.1 fd9ae290ab86 ppx_bin_prot.v0.17.1 5a52bd869be6 ppx_cold.v0.17.0 6e27a14fc665 ppx_compare.v0.17.0 187fb43bfd2c ppx_conv_func.v0.17.0 781fe99fd374 ppx_csv_conv.v0.17.0 69308fb43800 ppx_custom_printf.v0.17.0 d8e1947f6288 ppx_derivers.1.2.1 b98ec33f5664 ppx_deriving.6.1.3 f42e5829c88b ppx_diff.v0.17.1 81d2681f88af ppx_disable_unused_warnings.v0.17.0 65dc48a0f8b5 ppx_enumerate.v0.17.0 e7122a280248 ppx_expect.v0.17.3 98ac98ce14c0 ppx_fields_conv.v0.17.0 0928adf5590c ppx_fixed_literal.v0.17.0 e0372c8e158b ppx_globalize.v0.17.2 5f7ef8f4aa60 ppx_hash.v0.17.0 bc0fe0c11ba6 ppx_here.v0.17.0 60f73c5d441a ppx_ignore_instrumentation.v0.17.0 3c0490a8de1e ppx_inline_test.v0.17.1 f2d88e24f68f ppx_jane.v0.17.0 3a11799e220f ppx_let.v0.17.1 bc11f2708d58 ppx_log.v0.17.0 d57225683c73 ppx_module_timer.v0.17.0 75ca4a81806a ppx_optcomp.v0.17.1 ed5d91490cec ppx_optional.v0.17.0 0b3fbe68f580 ppx_pipebang.v0.17.0 dfc17982708e ppx_sexp_conv.v0.17.1 34b096a879f3 ppx_sexp_message.v0.17.0 751e132ae028 ppx_sexp_value.v0.17.0 946b1a7d9cfd ppx_stable.v0.17.1 057506439369 ppx_stable_witness.v0.17.0 caff8d83d3e0 ppx_string.v0.17.0 75580ee9a968 ppx_string_conv.v0.17.0 16d9e05449e6 ppx_tydi.v0.17.1 e46882fcbf28 ppx_typerep_conv.v0.17.1 0d3cfb333fe7 ppx_variants_conv.v0.17.1 531d5eb337f1 ppxlib.0.38.0 3ee699583a7b ppxlib_jane.v0.17.4 4b7b40a77119 ptime.1.2.0 668689079baf re.1.14.0 71fe1500ef55 result.1.5 8fc6ae0d59de rresult.0.7.0 02fffb5a5b61 seq.base 28d30f6112ac sexp_pretty.v0.17.0 63395c1d77f3 sexplib.v0.17.0 a1f645f08766 sexplib0.v0.17.0 ff60a3c976cf spawn.v0.17.0 a86cc461e970 splittable_random.v0.17.0 de7afb113356 stdio.v0.17.0 9ec1dce368f8 stdlib-shims.0.3.0 8ab1e1c44699 stringext.1.6.0 cc60b00504f7 time_now.v0.17.0 f57db7dbecaf timezone.v0.17.0 0977bfa7cf19 topkg.1.1.1 3bd227743fbd typerep.v0.17.1 760d0a2faa89 tyxml.4.6.0 858bdcf3a9f3 uopt.v0.17.0 fd97a0d253f0 uri.4.4.0 8c080858e561 uutf.1.0.4 705a428d1236 variantslib.v0.17.0 429f6e657e4d vg.0.9.5 fcc9acf7f947 zlib.0.8 5153ed1b2683 === STDOUT === Processing: [default: loading data] [biotk.0.3: dl] [biotk.0.3: extract] -> retrieved biotk.0.3 (https://opam.ocaml.org/cache) [biotk: dune build] + /home/opam/.opam/default/bin/dune "build" "-p" "biotk" "-j" "39" "@install" (CWD=/home/opam/.opam/default/.opam-switch/build/biotk.0.3) - (cd _build/default/lib/croquis && /home/opam/.opam/default/bin/ocaml-crunch --mode plain ../../fonts --output ./font_data.ml) - Generating ./font_data.ml - Skipping generation of .mli - (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -pthread -D_FILE_OFFSET_BITS=64 -Wall -fdiagnostics-color=always -O3 -g -I /home/opam/.opam/default/lib/ocaml -I /home/opam/.opam/default/lib/angstrom -I /home/opam/.opam/default/lib/angstrom-unix -I /home/opam/.opam/default/lib/base -I /home/opam/.opam/default/lib/base/base_internalhash_types -I /home/opam/.opam/default/lib/base/md5 -I /home/opam/.opam/default/lib/base/shadow_stdlib -I /home/opam/.opam/default/lib/base_bigstring -I /home/opam/.opam/default/lib/base_quickcheck -I /home/opam/.opam/default/lib/base_quickcheck/ppx_quickcheck/runtime -I /home/opam/.opam/default/lib/bigstringaf -I /home/opam/.opam/default/lib/bin_prot -I /home/opam/.opam/default/lib/bin_prot/shape -I /home/opam/.opam/default/lib/binning -I /home/opam/.opam/default/lib/core -I /home/opam/.opam/default/lib/core/base_for_tests -I /home/opam/.opam/default/lib/core/command -I /home/opam/.opam/default/lib/core/filename_base -I /home/opam/.opam/default/lib/core/heap_block -I /home/opam/.opam/default/lib/core/univ_map -I /home/opam/.opam/default/lib/core/validate -I /home/opam/.opam/default/lib/core_kernel -I /home/opam/.opam/default/lib/core_kernel/binary_packing -I /home/opam/.opam/default/lib/core_kernel/caml_threads -I /home/opam/.opam/default/lib/core_kernel/caml_unix -I /home/opam/.opam/default/lib/core_kernel/flags -I /home/opam/.opam/default/lib/core_unix -I /home/opam/.opam/default/lib/core_unix/error_checking_mutex -I /home/opam/.opam/default/lib/core_unix/signal_unix -I /home/opam/.opam/default/lib/csvfields -I /home/opam/.opam/default/lib/csvfields/csvlib -I /home/opam/.opam/default/lib/csvfields/xml-light -I /home/opam/.opam/default/lib/fieldslib -I /home/opam/.opam/default/lib/fmt -I /home/opam/.opam/default/lib/gel -I /home/opam/.opam/default/lib/gg -I /home/opam/.opam/default/lib/gsl -I /home/opam/.opam/default/lib/int_repr -I /home/opam/.opam/default/lib/jane-street-headers -I /home/opam/.opam/default/lib/num -I /home/opam/.opam/default/lib/ocaml/threads -I /home/opam/.opam/default/lib/ocaml/unix -I /home/opam/.opam/default/lib/ocaml_intrinsics_kernel -I /home/opam/.opam/default/lib/otfm -I /home/opam/.opam/default/lib/parsexp -I /home/opam/.opam/default/lib/ppx_assert/runtime-lib -I /home/opam/.opam/default/lib/ppx_bench/runtime-lib -I /home/opam/.opam/default/lib/ppx_compare/runtime-lib -I /home/opam/.opam/default/lib/ppx_deriving/runtime -I /home/opam/.opam/default/lib/ppx_diff/diffable -I /home/opam/.opam/default/lib/ppx_diff/diffable_cinaps -I /home/opam/.opam/default/lib/ppx_enumerate/runtime-lib -I /home/opam/.opam/default/lib/ppx_expect/config -I /home/opam/.opam/default/lib/ppx_expect/config_types -I /home/opam/.opam/default/lib/ppx_expect/make_corrected_file -I /home/opam/.opam/default/lib/ppx_expect/runtime -I /home/opam/.opam/default/lib/ppx_hash/runtime-lib -I /home/opam/.opam/default/lib/ppx_here/runtime-lib -I /home/opam/.opam/default/lib/ppx_inline_test/config -I /home/opam/.opam/default/lib/ppx_inline_test/runtime-lib -I /home/opam/.opam/default/lib/ppx_log/syntax -I /home/opam/.opam/default/lib/ppx_log/types -I /home/opam/.opam/default/lib/ppx_module_timer/runtime -I /home/opam/.opam/default/lib/ppx_sexp_conv/runtime-lib -I /home/opam/.opam/default/lib/ppx_stable_witness/runtime -I /home/opam/.opam/default/lib/ppx_stable_witness/stable_witness -I /home/opam/.opam/default/lib/ppx_string/runtime -I /home/opam/.opam/default/lib/ppxlib/print_diff -I /home/opam/.opam/default/lib/re -I /home/opam/.opam/default/lib/rresult -I /home/opam/.opam/default/lib/seq -I /home/opam/.opam/default/lib/sexplib -I /home/opam/.opam/default/lib/sexplib/unix -I /home/opam/.opam/default/lib/sexplib0 -I /home/opam/.opam/default/lib/spawn -I /home/opam/.opam/default/lib/splittable_random -I /home/opam/.opam/default/lib/stdio -I /home/opam/.opam/default/lib/stringext -I /home/opam/.opam/default/lib/time_now -I /home/opam/.opam/default/lib/typerep -I /home/opam/.opam/default/lib/tyxml -I /home/opam/.opam/default/lib/tyxml/functor -I /home/opam/.opam/default/lib/uri -I /home/opam/.opam/default/lib/uutf -I /home/opam/.opam/default/lib/variantslib -I /home/opam/.opam/default/lib/vg -I /home/opam/.opam/default/lib/vg/pdf -I /home/opam/.opam/default/lib/zip -I croquis -o pwm_stub.o -c pwm_stub.c) - In file included from pwm_stub.c:3: - pwm_stub.c: In function 'biotk_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:32:16: note: in expansion of macro 'Double_field' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:32:53: note: in expansion of macro 'Byte' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ - pwm_stub.c: In function 'biotk_opt_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:87:16: note: in expansion of macro 'Double_field' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:87:53: note: in expansion of macro 'Byte' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ -> compiled biotk.0.3 -> installed biotk.0.3 [WARNING] Opam packages conf-gsl.2 and conf-zlib.1 depend on the following system packages that are no longer installed: libgsl-dev zlib1g-dev - conf-gsl.2: depends on libgsl-dev - conf-zlib.1: depends on zlib1g-dev === STDERR === 2026-09-04 04:12.24: OK: build biotk.0.3 (runc: 17.1s, disk: 26KB) 2026-09-04 04:12.24: Job succeeded