Build:
- 0
2026-09-04 21:34.01: New job: build biotk.0.3 (8cf6e0b86bfe) 2026-09-04 21:34.01: Waiting for resource in pool day11-builds 2026-09-04 21:46.23: Got resource from pool day11-builds 2026-09-04 21:46.23: [profile full] build biotk.0.3 2026-09-04 21:46.23: build biotk.0.3 (8cf6e0b86bfe) === DEPENDENCIES (112 transitive) === angstrom.0.16.1 b7da2c05a431 angstrom-unix.0.16.1 544a7f54378a base.v0.17.3 88b199545512 base-bigarray.base 31ac6860ef52 base-threads.base 3d2f2cbc6db2 base-unix.base 3a38ddca6b5e base_bigstring.v0.17.0 1836942ba247 base_quickcheck.v0.17.1 cf3a0eaa4330 bigstringaf.0.10.0 377d6f8fb17f bin_prot.v0.17.0-1 acd2cdff2422 binning.0.0.0 908b49d068b2 camlzip.1.14 680aa1cb2b96 capitalization.v0.17.0 a5da2f9bb4fd cmdliner.2.1.1 e5dd77e6708d compiler-cloning.enabled 966a2e6839f0 conf-gsl.2 dfe9451d2b78 conf-pkg-config.5 74f50f3cfe72 conf-zlib.1 26591fa9352c core.v0.17.2 cbf752b056a1 core_kernel.v0.17.0 8f359ee64116 core_unix.v0.17.1 ae125e8e5934 cppo.1.8.0 3a29ac6f7bab crunch.4.1.0 227eab101753 csexp.1.5.2 8c096e7de322 csvfields.v0.17.0 1b8b2e3cec75 dune.3.24.2 25fbaa318de6 dune-configurator.3.24.2 517e3f9cad4b expect_test_helpers_core.v0.17.0 ecc5aaad79aa fieldslib.v0.17.0 edc750ef8e12 fmt.0.11.0 9ca62730ad74 gel.v0.17.0 9b48ace0b09d gg.1.0.0 1c0d345acc41 gsl.1.25.1 478617890a61 int_repr.v0.17.0 4da2b4572805 jane-street-headers.v0.17.0 f18028c937c5 jst-config.v0.17.0 37eb02483155 num.1.6 244eeeb7f1b4 ocaml.5.5.1 70ca0c66e0e8 ocaml-base-compiler.5.5.1 59841d7ed85e ocaml-compiler.5.5.1 492c0c740bd1 ocaml-compiler-libs.v0.17.0 235024900ef6 ocaml-syntax-shims.1.0.0 609f8309a47d ocaml_intrinsics_kernel.v0.17.2 10a82d6157c1 ocamlbuild.0.16.1 e25cf731aeb5 ocamlfind.1.9.9~preview 5e0261154b58 otfm.0.4.0 08a4f6e88dec parsexp.v0.17.0 79bf454965d2 ppx_assert.v0.17.0 82f34672b596 ppx_base.v0.17.0 9c31b43f583d ppx_bench.v0.17.1 060151aabb82 ppx_bin_prot.v0.17.1 32337c1b1684 ppx_cold.v0.17.0 ec043906a439 ppx_compare.v0.17.0 80e0df88ac09 ppx_conv_func.v0.17.0 48faad8b2e67 ppx_csv_conv.v0.17.0 8553129d2a14 ppx_custom_printf.v0.17.0 dcab0a0fc72b ppx_derivers.1.2.1 8d5f777c17ee ppx_deriving.6.1.3 39452778e8ff ppx_diff.v0.17.1 5551814d0102 ppx_disable_unused_warnings.v0.17.0 c21cd5b1cd6a ppx_enumerate.v0.17.0 970b405dbc8b ppx_expect.v0.17.3 8d1c0907a908 ppx_fields_conv.v0.17.0 bd7862ee1d85 ppx_fixed_literal.v0.17.0 ae9423476865 ppx_globalize.v0.17.2 f10cd28a39ed ppx_hash.v0.17.0 2ed6f4eb522a ppx_here.v0.17.0 8857ff0d96d1 ppx_ignore_instrumentation.v0.17.0 6ab0a7cf15a8 ppx_inline_test.v0.17.1 ef55758fcaf7 ppx_jane.v0.17.0 f6773c1dbae8 ppx_let.v0.17.1 6d9934afba54 ppx_log.v0.17.0 85866b846e16 ppx_module_timer.v0.17.0 844835ad3ea8 ppx_optcomp.v0.17.1 183524b02a4e ppx_optional.v0.17.0 90326d1cabed ppx_pipebang.v0.17.0 3c2c8380081c ppx_sexp_conv.v0.17.1 0740e0c56f6f ppx_sexp_message.v0.17.0 5fd501198821 ppx_sexp_value.v0.17.0 14149b7945fa ppx_stable.v0.17.1 510fa2041f49 ppx_stable_witness.v0.17.0 dfcd2e521392 ppx_string.v0.17.0 2be9b772be20 ppx_string_conv.v0.17.0 63dac62d76f5 ppx_tydi.v0.17.1 d8650e941877 ppx_typerep_conv.v0.17.1 1e16f0c9de3b ppx_variants_conv.v0.17.1 9aff095565d0 ppxlib.0.38.0 ac854f4fbd20 ppxlib_jane.v0.17.4 7ffd450ab5af ptime.1.2.0 23d9aa67a3a8 re.1.14.0 0218237d775d result.1.5 de914be7381a rresult.0.7.0 bd921cc3de54 seq.base 06af5ac9d1a8 sexp_pretty.v0.17.0 e05fa43c75d2 sexplib.v0.17.0 bfd4eff0be44 sexplib0.v0.17.0 055934f8e366 spawn.v0.17.0 e8e014ac578c splittable_random.v0.17.0 749c5c3b5ad2 stdio.v0.17.0 d79f7548eed3 stdlib-shims.0.3.0 cc542b70be6c stringext.1.6.0 bc0bd2fff16a time_now.v0.17.0 2f4e048c687f timezone.v0.17.0 18f74658a561 topkg.1.1.1 2919b4412ec4 typerep.v0.17.1 2d21e061d434 tyxml.4.6.0 418b39201dfe uopt.v0.17.0 f0961f808122 uri.4.4.0 70ce46d31b42 uutf.1.0.4 6b15766ffe2a variantslib.v0.17.0 d8fb65b9cecd vg.0.9.5 aefce06a86f2 zlib.0.8 d535403e00de === STDOUT === Processing: [default: loading data] [biotk.0.3: dl] [biotk.0.3: extract] -> retrieved biotk.0.3 (https://opam.ocaml.org/cache) [biotk: dune build] + /home/opam/.opam/default/bin/dune "build" "-p" "biotk" "-j" "39" "@install" (CWD=/home/opam/.opam/default/.opam-switch/build/biotk.0.3) - (cd _build/default/lib/croquis && /home/opam/.opam/default/bin/ocaml-crunch --mode plain ../../fonts --output ./font_data.ml) - Generating ./font_data.ml - Skipping generation of .mli - (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -pthread -D_FILE_OFFSET_BITS=64 -Wall -fdiagnostics-color=always -O3 -g -I /home/opam/.opam/default/lib/ocaml -I /home/opam/.opam/default/lib/angstrom -I /home/opam/.opam/default/lib/angstrom-unix -I /home/opam/.opam/default/lib/base -I /home/opam/.opam/default/lib/base/base_internalhash_types -I /home/opam/.opam/default/lib/base/md5 -I /home/opam/.opam/default/lib/base/shadow_stdlib -I /home/opam/.opam/default/lib/base_bigstring -I /home/opam/.opam/default/lib/base_quickcheck -I /home/opam/.opam/default/lib/base_quickcheck/ppx_quickcheck/runtime -I /home/opam/.opam/default/lib/bigstringaf -I /home/opam/.opam/default/lib/bin_prot -I /home/opam/.opam/default/lib/bin_prot/shape -I /home/opam/.opam/default/lib/binning -I /home/opam/.opam/default/lib/core -I /home/opam/.opam/default/lib/core/base_for_tests -I /home/opam/.opam/default/lib/core/command -I /home/opam/.opam/default/lib/core/filename_base -I /home/opam/.opam/default/lib/core/heap_block -I /home/opam/.opam/default/lib/core/univ_map -I /home/opam/.opam/default/lib/core/validate -I /home/opam/.opam/default/lib/core_kernel -I /home/opam/.opam/default/lib/core_kernel/binary_packing -I /home/opam/.opam/default/lib/core_kernel/caml_threads -I /home/opam/.opam/default/lib/core_kernel/caml_unix -I /home/opam/.opam/default/lib/core_kernel/flags -I /home/opam/.opam/default/lib/core_unix -I /home/opam/.opam/default/lib/core_unix/error_checking_mutex -I /home/opam/.opam/default/lib/core_unix/signal_unix -I /home/opam/.opam/default/lib/csvfields -I /home/opam/.opam/default/lib/csvfields/csvlib -I /home/opam/.opam/default/lib/csvfields/xml-light -I /home/opam/.opam/default/lib/fieldslib -I /home/opam/.opam/default/lib/fmt -I /home/opam/.opam/default/lib/gel -I /home/opam/.opam/default/lib/gg -I /home/opam/.opam/default/lib/gsl -I /home/opam/.opam/default/lib/int_repr -I /home/opam/.opam/default/lib/jane-street-headers -I /home/opam/.opam/default/lib/num -I /home/opam/.opam/default/lib/ocaml/threads -I /home/opam/.opam/default/lib/ocaml/unix -I /home/opam/.opam/default/lib/ocaml_intrinsics_kernel -I /home/opam/.opam/default/lib/otfm -I /home/opam/.opam/default/lib/parsexp -I /home/opam/.opam/default/lib/ppx_assert/runtime-lib -I /home/opam/.opam/default/lib/ppx_bench/runtime-lib -I /home/opam/.opam/default/lib/ppx_compare/runtime-lib -I /home/opam/.opam/default/lib/ppx_deriving/runtime -I /home/opam/.opam/default/lib/ppx_diff/diffable -I /home/opam/.opam/default/lib/ppx_diff/diffable_cinaps -I /home/opam/.opam/default/lib/ppx_enumerate/runtime-lib -I /home/opam/.opam/default/lib/ppx_expect/config -I /home/opam/.opam/default/lib/ppx_expect/config_types -I /home/opam/.opam/default/lib/ppx_expect/make_corrected_file -I /home/opam/.opam/default/lib/ppx_expect/runtime -I /home/opam/.opam/default/lib/ppx_hash/runtime-lib -I /home/opam/.opam/default/lib/ppx_here/runtime-lib -I /home/opam/.opam/default/lib/ppx_inline_test/config -I /home/opam/.opam/default/lib/ppx_inline_test/runtime-lib -I /home/opam/.opam/default/lib/ppx_log/syntax -I /home/opam/.opam/default/lib/ppx_log/types -I /home/opam/.opam/default/lib/ppx_module_timer/runtime -I /home/opam/.opam/default/lib/ppx_sexp_conv/runtime-lib -I /home/opam/.opam/default/lib/ppx_stable_witness/runtime -I /home/opam/.opam/default/lib/ppx_stable_witness/stable_witness -I /home/opam/.opam/default/lib/ppx_string/runtime -I /home/opam/.opam/default/lib/ppxlib/print_diff -I /home/opam/.opam/default/lib/re -I /home/opam/.opam/default/lib/rresult -I /home/opam/.opam/default/lib/seq -I /home/opam/.opam/default/lib/sexplib -I /home/opam/.opam/default/lib/sexplib/unix -I /home/opam/.opam/default/lib/sexplib0 -I /home/opam/.opam/default/lib/spawn -I /home/opam/.opam/default/lib/splittable_random -I /home/opam/.opam/default/lib/stdio -I /home/opam/.opam/default/lib/stringext -I /home/opam/.opam/default/lib/time_now -I /home/opam/.opam/default/lib/typerep -I /home/opam/.opam/default/lib/tyxml -I /home/opam/.opam/default/lib/tyxml/functor -I /home/opam/.opam/default/lib/uri -I /home/opam/.opam/default/lib/uutf -I /home/opam/.opam/default/lib/variantslib -I /home/opam/.opam/default/lib/vg -I /home/opam/.opam/default/lib/vg/pdf -I /home/opam/.opam/default/lib/zip -I croquis -o pwm_stub.o -c pwm_stub.c) - In file included from pwm_stub.c:3: - pwm_stub.c: In function 'biotk_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:32:16: note: in expansion of macro 'Double_field' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:32:53: note: in expansion of macro 'Byte' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ - pwm_stub.c: In function 'biotk_opt_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:87:16: note: in expansion of macro 'Double_field' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:87:53: note: in expansion of macro 'Byte' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ -> compiled biotk.0.3 -> installed biotk.0.3 [WARNING] Opam packages conf-gsl.2 and conf-zlib.1 depend on the following system packages that are no longer installed: libgsl-dev zlib1g-dev - conf-gsl.2: depends on libgsl-dev - conf-zlib.1: depends on zlib1g-dev === STDERR === 2026-09-04 21:46.55: OK: build biotk.0.3 (runc: 11.8s, disk: 26KB) 2026-09-04 21:46.55: Job succeeded